The NIH/NIGMS
Center for Integrative Biomedical Computing

CIBC Dataset Archive

Acknowledgment

SCIRun, map3d, and the datasets provided on this web site are Open Source software projects that are principally funded through the SCI Institute's NIH/NIGMS Center. For us to secure the funding that allows us to continue providing this software, we must have evidence of its utility. Thus we ask users of our software and data to acknowledge us in their publications and inform us of these publications. Please use the following acknowledgment text and citations and send us references to any publications, presentations, or successful funding applications that make use of what we provide:

"This project was supported by the National Institute of General Medical Sciences of the National Institutes of Health under grant numbers P41 GM103545 and R24 GM136986.”

Datasets

These are archived datasets that are not actively maintained beyond 2018

For more up to date resources, visit the SCI Head Models or the EDGAR Repository.

Aneurysm

Magnetic resonance angiogram of the vasculature of a patient's head
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Brain DMW

MRI scan of a head
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Brain DT

Twelve diffusion weighted volumes and one non-diffusion-weighted (B=0) reference volume.
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Brain EG

Comprehensive dataset of a head. This dataset contains a segmented tetrahedral finite element mesh, high- and low-resolution surface models of the scalp and cortex, a point-cloud of electrodes, and a dipole location for a forward simulation.
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Capecchi Mouse Paw

Mouse paw dataset used to test the Capecchi use case scenario in Seg3D
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Convert Examples

Examples that demonstrate how to use the SCIRun converters.
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Cylinder (3-shell)

This is a 3-shell cylinder model. Each shell has a distinct conductivity index.
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Heart DT

Diffusion weighted images of the heart.
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map3d

Various datasets for map3d.
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Matlab Examples

Matlab data contains geometry and potentials for a dog heart. The type of time series data is epicardial potentials. The mesh represents the geometry of 490 sock electrodes.
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MicroCT Collection

Collection of 51 small animal microCT scans.
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Seg3D Data

Heart and brain data for use with Seg3D
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Utah Torso

High resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. There are ten different conductivity values throughout the volume. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
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Utah Torso (low res)

Low resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
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Utah Torso (text based)

High resolution geometry of the Utah Torso model. The meshes are tetrahedral volumes, with conductivity tensors stored with the elements. There are ten different conductivity values throughout the volume. The surfaces are TriSurfs and correspond to the boundaries of the distinct conductivity regions.
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